rs249492718 SNP Detail

Summary

• ID
  rs249492718
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115508381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCGTGCC CCAAGAAGAA
  GTCAGTCAAG AAGGACTCCA TAGCATCTTG GTGATGCCCG GGTTCGTTTT GCTTTGTTTT
  TTCTCAAAGT TTTTGTTTGT TTCGTTTGTG TTTAAAGGTT CGTTCTTGAC ACCTGGACGC
  CCCATAGCCG GAGCCTGCGA GGCTCACAAC CCCCTACCTC GCTCAAGCCG GACGAAGCTG
  M
  GTCCGCAGGA CTCTGGGTCT ACACCGCGCG ATCCGCATCT TGCTGCTGTC GGCGACTGAC
  GGCGACCAGC TCACTCGCAA AGTTCCCTGA GCTGGGGTCC CCTCCCTCCT CAGCGGTGCA
  CTCCAATGGC CAGCCCTGCC TGCGCTGCCC GCACCACTTT TGCAAGACGA AGTCTCTGAG
  CGCCCCGCCG AGGCTGGGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359333873	MGP_WTSI_3_115417650	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249492718					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359333873	MGP_WTSI_3_115417650	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115508381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13725	CpG island 13725	within coordinates
Gm9889	predicted gene 9889	291 bp upstream
Rr397956	regulatory region 397956	1200 bp upstream
Rr583584	regulatory region 583584	1722 bp distal
Rr583585	regulatory region 583585	within coordinates
Rr583586	regulatory region 583586	330 bp proximal
Rr583587	regulatory region 583587	1831 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr31332	transcription start site region 31332	424 bp upstream
Tssr35275	transcription start site region 35275	1865 bp upstream
Tssr35276	transcription start site region 35276	985 bp upstream
Tssr35277	transcription start site region 35277	926 bp upstream
Tssr35278	transcription start site region 35278	48 bp downstream
Tssr35279	transcription start site region 35279	70 bp downstream
Tssr35280	transcription start site region 35280	122 bp downstream
Tssr35281	transcription start site region 35281	157 bp downstream
Tssr35282	transcription start site region 35282	201 bp downstream
Tssr35283	transcription start site region 35283	299 bp downstream