rs249496058 SNP Detail

Summary

• ID
  rs249496058
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96190463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGCTCTC TCCGGCGCCG
  ACGAGCCGCC CCCGTTCCAC CCCGAGCCGC GCAAGTCCGA CTGCGCACAG GACAAGAGCG
  TGTTCGGAGA GACCGAGGAG CAGAAGTGCT CCACGCCCGT CTACCCGTGG ATGCAGCGCA
  TGAATTCGTG CAACAGTGAG TGAGACTTCC CGCTGTCCCG TGTCTGTGTG TGTGTGTGTG
  K
  GGGGGGGGGT CGGCAAGCAG AAAGACTGAA AGTGTCAGCA TCCCCCAACC CCAATTCTCC
  CATTGGGAAC TAGGTGGGCA TCTCAGCAGA TAGAGCAAGA TTGCCCCCCC CCCCGACCTC
  CAGATCAGTC CTCTTGCCCG CAGAAGTTGC AAAGTTTGCA AAGTCCCAGC TGCACAGTAA
  GGCAGGGGGA ATAAGTGGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ
ss384366439	MGP_WTSI_11_96160951	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	T	G	T	T	T	G	T	T	T	G	T	G	G	T	G	T	T	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ
rs249496058					SNP	T	T	T	G	T	G	T	T	T	G	T	T	T	G	T	G	G	T	G	T	T	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384366439	MGP_WTSI_11_96160951	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96190463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3641	CpG island 3641	within coordinates
Cpgi3642	CpG island 3642	910 bp proximal
Hoxb5os	homeobox B5 and homeobox B6, opposite strand	within coordinates
Hoxb6	homeobox B6	within coordinates
Rr455361	regulatory region 455361	456 bp distal
Rr455362	regulatory region 455362	867 bp proximal
Tssr3658	transcription start site region 3658	372 bp downstream
Tssr104480	transcription start site region 104480	867 bp downstream
Tssr104481	transcription start site region 104481	839 bp downstream
Tssr104482	transcription start site region 104482	816 bp downstream
Tssr104483	transcription start site region 104483	554 bp downstream
Tssr104484	transcription start site region 104484	535 bp downstream
Tssr104485	transcription start site region 104485	508 bp downstream
Tssr104486	transcription start site region 104486	489 bp downstream
Tssr104487	transcription start site region 104487	415 bp downstream
Tssr104488	transcription start site region 104488	385 bp downstream