rs249499260 SNP Detail

Summary

• ID
  rs249499260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86412349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACCGTC ATTCCCATAC
  TACTATTGAG ATCCCCCGCT GAGCGCGGTC AGTCTGAGCT GTAGTGCTGC AGGTGCCAGA
  GGGTCGTTCA TCCCCACAGC TTGCATGGCT GTTGTCAGCA CAGACCGGGC AGCAGCGACC
  TAGGAACCAG CGCGCCAGCC ATCCTAGTGC TTCTGGAAAG GGGTTGGAGG AGGTGCTGTA
  Y
  TGACAGGGGA AGGAGGACTC CCAGATGCTG CCTTCTCCAG CCCCCTCCCC GCCCCCCTCA
  CCAACTCCAC GGCGCTGCCT CTTCGTGTTT ACTGTGATTT CGCATTCACC TATCCGTAAT
  TTTCCGAATT GGGGGCTCTT CCTGCTGTTT TCCAGCAACT CCTTTCTCCT GTGAGTTTCA
  CCCGCCCAGC GCGCGAGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401532342	MGP_WTSI_18_86563616	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249499260					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401532342	MGP_WTSI_18_86563616	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86412349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	within coordinates
Cpgi10353	CpG island 10353	577 bp proximal
Gm54041	predicted gene, 54041	449 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	728 bp upstream
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	548 bp upstream
Tssr152243	transcription start site region 152243	569 bp upstream
Tssr152244	transcription start site region 152244	586 bp upstream
Tssr152245	transcription start site region 152245	694 bp upstream
Tssr152246	transcription start site region 152246	728 bp upstream
Tssr152247	transcription start site region 152247	778 bp upstream
Tssr152248	transcription start site region 152248	960 bp upstream
Tssr152249	transcription start site region 152249	1051 bp upstream
Tssr152250	transcription start site region 152250	1322 bp upstream