rs249509012 SNP Detail

Summary

• ID
  rs249509012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56299052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCTATT CAGGCCCTAC
  GGTGTTGGTC TGGTGGTCAT CTTGGGCTCA CTTCTCATCC AGCCCTCTTA ACTGGCCTCC
  TTCGAGAGAG TCGCCTGCCT GGGGCTCACT CCCACTCAGG GCCCTTACCT AGAAGAGATA
  CTTCTAGTCT CCAGCTAGCT CCCTGTCCTG GGAGCTGTCT GGGCCTGAGC AGCTCTGGAC
  Y
  CGTTGGTGTT GGACTTGTGG TTGTCTCAGG CTCACTTCTT TTCAGGGAGT GTTAGGCTAC
  TAATCAATCA GAGGCTCACA GGTCAGAAAG CTGAGTGTAG ACATAGCCTC TCTCCTCTCG
  GCCACCTACT GACGCACATG TGACACAACA GCCACACCTG CAATGCCTCT AGGACGTGGA
  CATTGATTCT TAAAAGACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386071327	MGP_WTSI_12_57353254	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249509012					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386071327	MGP_WTSI_12_57353254	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56299052 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	976 bp upstream
Gm25917	predicted gene, 25917	48 bp downstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	within coordinates
Rr260934	regulatory region 260934	1452 bp distal
Rr267727	regulatory region 267727	within coordinates
Rr267728	regulatory region 267728	1949 bp proximal
Tssr113509	transcription start site region 113509	880 bp upstream
Tssr113510	transcription start site region 113510	921 bp upstream
Tssr113511	transcription start site region 113511	961 bp upstream
Tssr113512	transcription start site region 113512	983 bp upstream