rs249509091 SNP Detail

Summary

• ID
  rs249509091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45210678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCCTAAG GGGCTGGAGA
  CATGGTTCAG TTAGTAAAGT CCTTGCTGCA CAAGAATGAA GACAGAAGTT TGATCCCCCA
  AATCCATGTT AAAAAGTCGG ATGTGGAGGT TCAGTTTGTA ATCCCAAACT GGTGAGGGTG
  TGACAGGCAG GTTCCTTGAG GCTCCCTGGT CCGCTAGACT AGCTTAACCG GGAACTTTCA
  R
  GTTAATGCGA GACTCACAAG ACAAGACTGA TGGTCCCTCT GCATGCCCTG GGACATACAC
  TCATGAAGAG AGGAAGAGGG GGAAAGAGGA GAGCGCGTGG GGAGAGCATG GGCATGAAGG
  TGAGATGGGG GGAGGGAGAG ATTTGAGAGC AGGCTCTCTT GAGGTGGAGG AAAGAGGAAA
  ACCGCCACTG TGATCTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380236822	MGP_WTSI_10_45054388	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249509091					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380236822	MGP_WTSI_10_45054388	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45210678 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1517	CpG island 1517	595 bp proximal
Popdc1	popeye domain cAMP effector 1	1190 bp upstream
Rr431084	regulatory region 431084	700 bp proximal
Rr431085	regulatory region 431085	1092 bp proximal
Rr431086	regulatory region 431086	1201 bp proximal
Tssr93188	transcription start site region 93188	1141 bp upstream
Tssr93189	transcription start site region 93189	1169 bp upstream
Tssr93190	transcription start site region 93190	1304 bp upstream
Tssr93191	transcription start site region 93191	1323 bp upstream
Tssr93192	transcription start site region 93192	1722 bp upstream