rs249512145 SNP Detail

Summary

• ID
  rs249512145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113363473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAT AGATGATTGG ATGGATGGAT
  R
  GATGGATGGA TAGATGGTTA GATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322424319	CHEV_7_120907750	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249512145					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113363473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	1396 bp proximal
Rr653859	regulatory region 653859	1334 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	1762 bp upstream
Tssr68625	transcription start site region 68625	1539 bp upstream
Tssr68626	transcription start site region 68626	1601 bp upstream
Tssr68627	transcription start site region 68627	1670 bp upstream
Tssr68628	transcription start site region 68628	1789 bp upstream
Tssr68629	transcription start site region 68629	1808 bp upstream
Tssr68630	transcription start site region 68630	1847 bp upstream
Tssr68631	transcription start site region 68631	1883 bp upstream