rs249522627 SNP Detail

Summary

• ID
  rs249522627
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:122822316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGGCTCG CGGGAAAGGC
  GGTCACGGGC TGGGGACTCC TGCCGCACGC CCAGGCCTGC CGGGGCCTCG GGCCGAGCTC
  CGTCCGCTCG GCGCGCCTTC CGGAGCCCCG GTGCTCCCGG CGGGCGCTGT AAAGATGGCG
  GCGGGCGGGC GAGCCACGTT GTGCCCCGGC CGGCGGGGAA AGTTCCGGCA CCTCCTTCCC
  S
  CTCCGGCCGC CCGGCGCGGC CCGCAGCGCT CCACCCCGGC GCGGCCGCGG CTGCTCGCCG
  CAGAAACTGG CGGGAAAGCC GTGCCCGGCG AGTCTAGTGC GCACGCTCGC CGAACGTGGG
  GCGCCTGCCT TCTCCCTATT TTTAGGCACG GTTTGGAAGA GAGCCGACTG CAGTAGGGCT
  TCACCTCCGC GTGGCCGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss382064151	MGP_WTSI_10_122423467	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249522627					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382064151	MGP_WTSI_10_122423467	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:122822316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2309	CpG island 2309	within coordinates
D630033A02Rik	RIKEN cDNA D630033A02 gene	within coordinates
Gm63655	predicted gene, 63655	580 bp upstream
Mirlet7i	microRNA let7i	687 bp upstream
Rr402310	regulatory region 402310	1188 bp downstream
Rr402311	regulatory region 402311	272 bp upstream
Rr402312	regulatory region 402312	1343 bp upstream
Rr440469	regulatory region 440469	591 bp distal
Rr440470	regulatory region 440470	90 bp distal
Rr440471	regulatory region 440471	883 bp proximal
Tssr96078	transcription start site region 96078	163 bp upstream
Tssr99656	transcription start site region 99656	769 bp upstream
Tssr99657	transcription start site region 99657	347 bp upstream
Tssr99658	transcription start site region 99658	58 bp downstream