rs249527154 SNP Detail

Summary

• ID
  rs249527154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31080149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCGCCAG GTAAAGAAAC
  GTGGATTTTA AAGCCATGGC TTTATACTGA GTTACCTTTA ACATCGTGAA CAATCTCCTT
  GTCTGAAATG GTGCCCTCGC TGCTGGGTTC GGTTGGATTC TCCTCATTGT AATCGTCTCC
  TTTAAAGGGG TCATAGTAGT AGTCACGGTC TTCCACCACT TCCTCCCCTT CCTCCTCATC
  Y
  TCTTCTTCCT CATCTGCTGC TGCTTCTGTG AAGTCTTCCA AATCTGCTTC AGTAGGAAAT
  TCACTAGGTC ACAAGCCAAA AAGCAAAGTT AGTAGCACAA AGCATGACTC CCTTCCCTAT
  TCTGAAACAC ACAAACAGAG ACAGGAAATA AGCTCCTCTC ACATGTAACT GAGCACCAAA
  GCCCTCCGCC CAACTTTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889494	CHEV_9_30976438	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249527154					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31080149 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Rr675959	regulatory region 675959	167 bp distal
Tssr88634	transcription start site region 88634	1195 bp upstream
Tssr88635	transcription start site region 88635	1149 bp upstream
Tssr88636	transcription start site region 88636	45 bp upstream
Tssr88637	transcription start site region 88637	11 bp upstream
Tssr88638	transcription start site region 88638	22 bp downstream
Tssr88639	transcription start site region 88639	1667 bp downstream
Tssr88640	transcription start site region 88640	1678 bp downstream
Tssr88641	transcription start site region 88641	1690 bp downstream
Tssr88642	transcription start site region 88642	1715 bp downstream
Tssr88643	transcription start site region 88643	1754 bp downstream