rs249529447 SNP Detail

Summary

• ID
  rs249529447
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127346920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACAGAC TGACTGACCC
  TGCCTTCAAC CTTCACCTCA CCTCAGCTGG GACTCCTGGG GACCTCTTTA TGGCCCTTGC
  TTCTGTCCCA CCAGCCACCG CGCTCCCTTT CAAATGCTTA AGTTGGGACT GGGAGGGCCT
  GATGGGAGTG TTGCAGCAGG AACCGAAGGA GGTCTGCACC TGAAAGCCTG GGAAGGAAGC
  K
  TGTGGGCCAA TCAAGCTGGG GCCACGGGCT TCTGAGTCCA CAGCCCCAGG CAGCTCCTGT
  CACCACCCCC TCATTACACT GCTAAGCTAA TGTGGGCTAA CAAGGCTTGC TGGGGGGACC
  TAGCGACTTC TCTCACACAC GCAACCCCTC AGGGCACAAA TGGCAGCGCC TGTGTGTGCA
  GAGAAGGACT TCCTTCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382186861	MGP_WTSI_10_126948107	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249529447					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382186861	MGP_WTSI_10_126948107	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127346920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2360	CpG island 2360	1455 bp distal
Cpgi2361	CpG island 2361	490 bp proximal
Cpgi2362	CpG island 2362	1646 bp proximal
Rr402329	regulatory region 402329	1720 bp downstream
Rr402330	regulatory region 402330	1749 bp upstream
Rr440928	regulatory region 440928	1902 bp distal
Rr440929	regulatory region 440929	1290 bp distal
Rr440930	regulatory region 440930	875 bp proximal
Rr440931	regulatory region 440931	1038 bp proximal
Rr440932	regulatory region 440932	1233 bp proximal
Rr440933	regulatory region 440933	1914 bp proximal
Rr440934	regulatory region 440934	1963 bp proximal