rs249535456 SNP Detail

Summary

• ID
  rs249535456
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCACCC CCAGCTCGGG
  GGCGGAACCC CGGGGGCGGG GGCGGGAGGA GGGGCGGGGC CATAGCGGAC CGCGGCCCAA
  TGAAGGCGGG ACCTGGTGGG TTGGGCAGGG TACTGGGAGG GGCGGGGCCA GGGAGGGGCG
  GAACCAAGGG AGGTGTAGCA TTATTCCAGT TAGTGCATGA AACTATGAAT GAGGCCATAG
  S
  CTCCTGAGGG AGGTTGTATG TGTCTGACAC CTATTAAAGT ATATGACATC TGTGAAATTG
  TGTATCTGTA ACTATCTGTA CACAACAGAC AGATATCCTG TGGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTATGT GTAAAAGACA GAGAGAGAGG AAGAGAGAGA GTGTCAGAGG
  TGAGGAACAC TGTAACAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957991	CHEV_3_127599441	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249535456					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	within coordinates
Fam241a	family with sequence similarity 241, member A	200 bp upstream
Rr398009	regulatory region 398009	within coordinates
Rr584896	regulatory region 584896	504 bp distal
Rr584897	regulatory region 584897	within coordinates
Tssr35606	transcription start site region 35606	1915 bp upstream
Tssr35607	transcription start site region 35607	1010 bp upstream
Tssr35608	transcription start site region 35608	290 bp upstream
Tssr35609	transcription start site region 35609	253 bp upstream
Tssr35610	transcription start site region 35610	186 bp upstream