rs249536957 SNP Detail

Summary

• ID
  rs249536957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110231407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGATTT GAACCTGTCC
  ACAGCTAAGA AATAGTCACA GTTCTTTTTT TTTTTTTTTT TTTTAATCTG TAGCTACTGT
  TGCTGGCTGT GGGAATGGTA TCACCCATTT GTAATCAACC AAGGGTACCA GACGATTTCT
  AGAAAGTTCA GCACCAGCAG GTTGTCTGAA CAGCTAAGGG TGGAAAGGAG AGATGGGGTG
  R
  GCCAGAAACC AGTTCTTTTT TTAGTTCTTG CTTGGTGTCA ACTATTCTTC TAGCCACTTT
  CTATACCTTA TCTCACCAAG TTCTTACAGT AGCTTTCTGA AGGAGGTGTT ATTATCTCTC
  TTAGTAGATA AGGAAGCTGA ACTTCAGAGA GGTGAAGTAA CTCAGGCAAG GTCACACAGC
  GAGTGGTGGA ACGTGGCTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322397544	CHEV_7_117775714	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249536957					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110231407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19578	CpG island 19578	1397 bp distal
Gm28863	predicted gene 28863	1303 bp upstream
Gm72687	predicted gene, 72687	1978 bp upstream
Rr400547	regulatory region 400547	1692 bp downstream
Rr653271	regulatory region 653271	1989 bp distal
Rr653272	regulatory region 653272	1488 bp distal
Rr653273	regulatory region 653273	1834 bp distal
Rr653274	regulatory region 653274	277 bp distal