rs249539822 SNP Detail

Summary

• ID
  rs249539822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGATGGG GAGAGGGGGG GGGTTGGGGC
  GGGCGGAGAG CAGTCTCACA TTACAAGGTC CACACTGAAC CGAGGAACCC ACTCATCTGT
  AACTGCCCAT CAACCTTATG TAAAAGCCAC CCGTAAATCA GCTATGAGAC AAGAAGGGCT
  Y
  TGGAGCAAAA ATCTCCATTT CTTCTTCCTG AACCAGTCGG TCAGCATGTC CACTGGACCG
  GCCTGATCTG AGGCGAATGG CTTGTGTTAG CTTTAGAGAG CTGAGACGGG GAGGTCGCAG
  CCTCTGTTAG CCTGTGTCCT CTGCTGAAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169566	CHEV_1_186633877	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249539822					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	663 bp proximal
Gm70890	predicted gene, 70890	1926 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425289	regulatory region 425289	1786 bp distal
Rr425290	regulatory region 425290	1189 bp proximal
Rr425291	regulatory region 425291	1937 bp proximal
Tssr15650	transcription start site region 15650	982 bp downstream
Tssr15651	transcription start site region 15651	1158 bp downstream
Tssr15652	transcription start site region 15652	1172 bp downstream
Tssr15653	transcription start site region 15653	1261 bp downstream
Tssr15654	transcription start site region 15654	1288 bp downstream
Tssr15655	transcription start site region 15655	1306 bp downstream