rs249540816 SNP Detail

Summary

• ID
  rs249540816
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:30853078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGACAC AGGGCGAGGG
  GCTAGGACTT GTTCTGGTAC TGAGAGAACG TTGATTCTGA ATCCAATCTA GACCTGCACC
  GGTAATACTA GAGTGGATAC AAAGATTGTG GTTTGTGGTC TTAAGACGGT CATCACTCTT
  GCTGGATCCC ACTCTCTTCT GTAGGAAGGT GGCAGAGTGA ATTATCTCCC CACATATTTA
  K
  ATGTATTTGG AGCTGTGGGC AATACAGTAT AAGGGACCTG GCCACCTTTC CCCGTGTCAG
  CAAGGCAACT GGCAGAGCTG TGCATCAGAA GACAGACTGG TGAAGTACTT CCTCCCATAG
  GAAACGAGAA ATGTAGTGGT ATTGAATCCA TTTTACTTTC CTGGTAGTAG CCTCTCACTA
  CCCCCACTAT GCTCAGAAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889047	CHEV_9_30749367	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249540816					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:30853078 () rs orientation: forward

Symbol	Name	Function Class
Adamts8	ADAM metallopeptidase with thrombospondin type 1 motif 8	780 bp upstream
Cpgi21523	CpG island 21523	476 bp proximal
Gm10700	predicted gene 10700	within coordinates
Gm69354	predicted gene, 69354	within coordinates
Rr675918	regulatory region 675918	996 bp distal
Rr675919	regulatory region 675919	1248 bp distal
Rr675920	regulatory region 675920	290 bp proximal
Tssr84208	transcription start site region 84208	759 bp upstream