rs249540893 SNP Detail

Summary

• ID
  rs249540893
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9067033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCCTTC CTTCCTCCCT
  CCCTCCCTCC CTCCCTCCCT CCCTCCCTCC CTCCCTCCCT CCCTCCCTCC CTCTCTCTCT
  CTCTCTCTCT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT
  TTCTTTTCTC TCCCCCTCCC CCATGGTGAC TTCCCTGGCC TCTGTCCTTG GGTGACCTTA
  S
  CCGAGAGTGA GAGCAGCTTC CCGCAATAAA CCAGCATTGA ATGTTATCTA ACCTGTGCTG
  AGTTGGCTCA AAATAACTCA TCACTTTCTA TTTTGCTGGC ACTAGAATAA CAATGAACAG
  AATGGGTTCC TGGTGAGATT GGATAACAAA GGGCTGGTAC TCGTCTCACA CCAACTTTAC
  AATCATGGGA GGGGCAGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss382361408	MGP_WTSI_11_9017036	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249540893					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382361408	MGP_WTSI_11_9017036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9067033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2578	CpG island 2578	1319 bp proximal
Rr385585	regulatory region 385585	within coordinates
Rr442635	regulatory region 442635	536 bp distal
Rr442636	regulatory region 442636	580 bp proximal
Rr442637	regulatory region 442637	1485 bp proximal
Tssr3423	transcription start site region 3423	1065 bp upstream
Tssr3424	transcription start site region 3424	1101 bp upstream
Tssr100322	transcription start site region 100322	919 bp upstream
Tssr100323	transcription start site region 100323	965 bp upstream
Tssr100324	transcription start site region 100324	1037 bp upstream
Tssr100325	transcription start site region 100325	1503 bp upstream
Tssr100326	transcription start site region 100326	1538 bp upstream
Tssr100327	transcription start site region 100327	1586 bp upstream
Upp1	uridine phosphorylase 1	1070 bp upstream