rs249543443 SNP Detail

Summary

• ID
  rs249543443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60693421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACACTCA AGTAAGATTT
  TGTTCCAATC TAAGAACTAG TTCCAGTGTT ATAAAAACTG GTGGAAGCAG CAAAGGCCTT
  TAAGTATGCT CAGTTTTTGA AAGCAGTTGA CAGACTGCCT ATAAGCCCTC GGCAGTCAAA
  GGTCTGCCTT CGGTTCAGGC ACCAGGCTGT CGCAGTCTTA AAGCCTTGTA CTAAAGTGCA
  Y
  GGAAGTTCAG TTGCAGACAC AATTGCTACC TCTTCAGCCT GTCCGAATGC CGCCACCACC
  AACCTACGTT TGGGACTGTC ATCAAATCTC TTCTGACAGT ACTACATGGG ATCTGTGTCT
  GATGCCACCA CCCTTAGTAA AGGGTTCTGA ATCGGATGTT CTCCAAGCCA CAAAGAAATT
  GGGTACATAT GACAAGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394242297	MGP_WTSI_15_60653127	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249543443					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394242297	MGP_WTSI_15_60653127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60693421 () rs orientation: forward

Symbol	Name	Function Class
9930014A18Rik	RIKEN cDNA 9930014A18 gene	1393 bp upstream
Cpgi7129	CpG island 7129	1131 bp proximal
Lratd2	LRAT domain containing 1	within coordinates
Rr502991	regulatory region 502991	226 bp proximal
Rr502992	regulatory region 502992	710 bp proximal
Rr502993	regulatory region 502993	1476 bp proximal
Tssr131400	transcription start site region 131400	1375 bp upstream
Tssr131401	transcription start site region 131401	1407 bp upstream
Tssr134471	transcription start site region 134471	1852 bp upstream
Tssr134472	transcription start site region 134472	1715 bp upstream
Tssr134473	transcription start site region 134473	1393 bp upstream
Tssr134474	transcription start site region 134474	633 bp downstream