rs249555350 SNP Detail

Summary

• ID
  rs249555350
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152019580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCGAAG CCAGCGGGCG
  GGCAAAGGGG CAATAGAAGC CACCGGCCAG CCCGGGCCCT CCACCCAGCC AACCCCTGGG
  ACCTTTTAGA CCGCAACCTG AAGGTCACCT GAGACGCCCT TGAGAAAAAC AGCCCCAAAC
  AGCCTTCTTG GAAAAAACAG GGAGGGTGAG GCAACCCCGC TCTCCCCACC CCCACCCCCC
  A
  CCCCCACATT CTCCCGCGTC CAGATGCTCC TTTCTCCTCC CTGAATATCT CCGGCTGCCC
  ACCTCTGAAC CCAGAACGGC AAGATTTCCC CAGGCAAAGA TGGTCTGATT CTGGTGGTGT
  TTTGCCATTT GACCTTGGTG CAGGCTACCC AACCTCTATC ACCTTCAACT CCTAATCTGC
  AGAGAGGGAT CACATGGCAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J
ss356146286	MGP_WTSI_2_152003396	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	C57BL/6J	C57BL/10SnJ	C58/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J
rs249555350					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356146286	MGP_WTSI_2_152003396	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152019580 () rs orientation: forward

Symbol	Name	Function Class
Gm75354	predicted gene, 75354	within coordinates
Rr374077	regulatory region 374077	within coordinates
Rr567308	regulatory region 567308	164 bp distal
Rr567309	regulatory region 567309	within coordinates
Tssr20778	transcription start site region 20778	67 bp upstream
Tssr20779	transcription start site region 20779	1878 bp upstream