rs249556194 SNP Detail

Summary

• ID
  rs249556194
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80863346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCTACG GTAGCCCGAC
  TAGGGGCGCT CACCCAGCCG TCCGCCGGGC CGAGGAGAGG CACCGCCAGG CGAGCGAGCG
  CCCGTTTCCT CGAGAGTCAG ACGAGGCGAG GGCGGCGGTG CAAACGCGGC GCGGGCTCGC
  GGCTCCCGGT GGCGAGAGCG CAAATCTCCA CCCCCGACAT TTCCCCGGAA GCGCGGCGGC
  Y
  GCGGCGCGCG CGGCGATGTG AGGGAGACAG CGGCGGCTCC CGCCTCAGGA AGGGCATGTT
  CGGAGGGGCG TCCGCGGCGC GCCTCTCGCC CCAGCGCCCC CTCCCCACGG CCGCCGCGCC
  CGCAGCGCAA TAAAAGGGGC GGCCGCGCTT CCTGACGCGA GACCCGCGCT TGCCGCCGCC
  GCCCACCCGC CTGCCCGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss372063450	MGP_WTSI_7_88358484	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249556194					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372063450	MGP_WTSI_7_88358484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80863346 () rs orientation: forward

Symbol	Name	Function Class
1700023D08Rik	RIKEN cDNA 1700023D08 gene	425 bp upstream
Cpgi19350	CpG island 19350	within coordinates
Gm73624	predicted gene, 73624	217 bp upstream
Pde8a	phosphodiesterase 8A	within coordinates
Tssr67494	transcription start site region 67494	314 bp downstream
Tssr67495	transcription start site region 67495	276 bp downstream
Tssr67496	transcription start site region 67496	256 bp downstream
Tssr67497	transcription start site region 67497	239 bp downstream
Tssr67498	transcription start site region 67498	102 bp downstream
Tssr67499	transcription start site region 67499	within coordinates
Tssr67500	transcription start site region 67500	153 bp upstream
Tssr67501	transcription start site region 67501	179 bp upstream
Tssr67502	transcription start site region 67502	447 bp upstream
Tssr73321	transcription start site region 73321	438 bp upstream
Tssr73322	transcription start site region 73322	385 bp upstream
Tssr73323	transcription start site region 73323	53 bp downstream
Tssr73324	transcription start site region 73324	77 bp downstream