rs249561694 SNP Detail

Summary

• ID
  rs249561694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95016416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGTGGA TTTCTGAGTT
  CCAGGCCAGC CTGGTCTACA GAGTGAGTTC CAGGACAGCC AGGGATATAC ACAGAGAAAC
  CCAGTCTCAA AAAAAACAAA ATAATAAATA ATAATAATAC ACTATCTTTA AACATCTGGG
  CATGGTGGCA CAGTATCTTT AAACATCTGG GCATGGTGGC ACACTATCTT TAAACATCTG
  R
  GCATGGTAGC ACACGCCTGA GGTTCCAGCT CCACAGATAG CTAAGATCCC TTAACTTGTT
  CCCTTGAGTT TTCTTCCCTT GAGTTTTCTT CCCTTTTTCT CCCCCGCCCC CAAATCTTGA
  TTTCCAAAAG AGCCTGGACG ATAGGCAAAA TATAGCATAC CTTTATCTCA GGGGTAAATG
  TAACCGAAAG GAGGGCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358895202	MGP_WTSI_3_94913027	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249561694					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358895202	MGP_WTSI_3_94913027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95016416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13496	CpG island 13496	1994 bp distal
Cpgi13497	CpG island 13497	1764 bp proximal
Gm65644	predicted gene, 65644	1137 bp downstream
Rr367478	regulatory region 367478	1245 bp downstream
Rr367479	regulatory region 367479	1768 bp upstream
Rr580813	regulatory region 580813	1685 bp distal
Rr580814	regulatory region 580814	1455 bp distal
Rr580815	regulatory region 580815	982 bp distal
Rr580816	regulatory region 580816	1427 bp proximal
Tssr30489	transcription start site region 30489	1908 bp upstream
Vps72	vacuolar protein sorting 72	1937 bp upstream