rs249568409 SNP Detail

Summary

• ID
  rs249568409
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94796944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCCTGG AGCCAAGAAA
  GTTTTGTCCA ACGGTTTTTC CTGTCGCTGG AGCTGCTATG TCTCCTCCCA CCTGGGTCGC
  CATGGAGACT CAGCGCCTTC CTTCTCCAGG CAAAATGGGC GAAGCTTAGT TAGCTCAGCC
  CTGATTGTAG CAAGCCCACT TTCTCGGACA TTGTCCTTCT CCATTTTTAT TTATTTATTT
  W
  TTTTTTACCA AAAGAAAGCT AGCCAGGGCA TTAGTGCTTG AACGGAAGTG CATAGCACAC
  GGTACCTGAG AGCTCCCCAG GACCCGGAGA CTTTGGAGAA AGCAGTTGGG AGCACACTGA
  AGCTATAATG AATTGCAAAC TCCCAGACAC TGGAGGGTTC CCCCCTCTCA GTCCTCTCCT
  TTTGGGGGAA GTAGAGGTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	DBA/2J	LEWES/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss397413150	MGP_WTSI_16_95217692	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	T	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	DBA/2J	LEWES/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs249568409					SNP	A	A	A	A	A	A	A	A	A	A	A	T	A	T	A	A	A	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397413150	MGP_WTSI_16_95217692	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94796944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8509	CpG island 8509	1028 bp proximal
Kcnj6	potassium inwardly-rectifying channel, subfamily J, member 6	within coordinates
Rr520239	regulatory region 520239	24 bp distal
Rr520240	regulatory region 520240	262 bp distal
Rr520241	regulatory region 520241	633 bp proximal
Rr520242	regulatory region 520242	1560 bp proximal
Tssr142241	transcription start site region 142241	1120 bp upstream
Tssr142242	transcription start site region 142242	1019 bp upstream
Tssr142243	transcription start site region 142243	945 bp upstream
Tssr142244	transcription start site region 142244	932 bp upstream
Tssr142245	transcription start site region 142245	1289 bp downstream
Tssr142246	transcription start site region 142246	1385 bp downstream
Tssr142247	transcription start site region 142247	1491 bp downstream
Tssr142248	transcription start site region 142248	1522 bp downstream
Tssr142249	transcription start site region 142249	1568 bp downstream
Tssr142250	transcription start site region 142250	1621 bp downstream
Tssr142251	transcription start site region 142251	1653 bp downstream