rs249571116 SNP Detail

Summary

• ID
  rs249571116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135143869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAATTTGA GGGGAGCTTC
  TTCGCGCTGC TCAGCCCTCT CTGAGGAGCA CGGGAAGAAA TCTCCATCAC CTGGGCCGGC
  AGAAGCCGTG AACCGGCTCC ACCTTGACTA AGGCATCTAG TCACCCCGCG GCCCCGCCCA
  CAGCACCTCC CCGATTGGAC GCCCGGGGGA GGGCCGTGTC GGCGCGCGAC GGCCGGCCGG
  Y
  CGGGGGAATT CCATTTCCTC CCCCGCCCAC TAGCATAAGC ACTCAGGGGC GGTGCTTCCC
  TCGCAAGACC CGCCCAGTAA GAGCCCAGGG GGGGGGTTGC CGGCGCATCT CGCGATAACT
  TGCGGATTTG GGGGCGGGTC CCGAGCCAGG AAGAGAGCAC AAAACTGCCC TTAAGTCATT
  GCAGACCCGG AGCTGCTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359834779	MGP_WTSI_3_135101072	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249571116					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359834779	MGP_WTSI_3_135101072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135143869 () rs orientation: forward

Symbol	Name	Function Class
4930539J05Rik	RIKEN cDNA 4930539J05 gene	within coordinates
Cpgi13855	CpG island 13855	within coordinates
Rr367562	regulatory region 367562	within coordinates
Rr367563	regulatory region 367563	227 bp upstream
Rr585708	regulatory region 585708	68 bp distal
Rr585709	regulatory region 585709	within coordinates
Rr585710	regulatory region 585710	156 bp proximal
Rr585711	regulatory region 585711	494 bp proximal
Rr585712	regulatory region 585712	1114 bp proximal
Rr585713	regulatory region 585713	1259 bp proximal
Tssr31809	transcription start site region 31809	6 bp upstream
Tssr31810	transcription start site region 31810	36 bp upstream
Tssr31811	transcription start site region 31811	172 bp upstream
Tssr31812	transcription start site region 31812	271 bp upstream
Tssr31813	transcription start site region 31813	324 bp upstream
Tssr31814	transcription start site region 31814	366 bp upstream
Tssr31815	transcription start site region 31815	418 bp upstream
Tssr31816	transcription start site region 31816	435 bp upstream
Tssr31817	transcription start site region 31817	614 bp upstream
Tssr31818	transcription start site region 31818	918 bp upstream
Tssr31819	transcription start site region 31819	946 bp upstream
Tssr31820	transcription start site region 31820	981 bp upstream
Tssr31821	transcription start site region 31821	993 bp upstream
Tssr31822	transcription start site region 31822	1276 bp upstream
Tssr31823	transcription start site region 31823	1334 bp upstream
Tssr31824	transcription start site region 31824	1362 bp upstream
Tssr35782	transcription start site region 35782	102 bp upstream
Tssr35783	transcription start site region 35783	494 bp downstream
Tssr35784	transcription start site region 35784	549 bp downstream
Ube2d3	ubiquitin-conjugating enzyme E2D 3	124 bp upstream