rs249578222 SNP Detail

Summary

• ID
  rs249578222
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69492482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCTTTCCC AAGAACACCA
  TTTTTTCATT CAGGAGCCAC CGTCAAGGAC CTTCCGAGGT GGGACTTACA TGGAACTTTT
  TGCCATAGTA GGGAAAGTAC ATCAGATCAA TGCTGCCATT AGCAGGGAAC ATGACAAAGT
  GGCCAAGGTT CTCAGCATCT TCATCTCTCT GTGGGGGTGC AGGAAGGTTA AGGGGAGAGG
  M
  TGTTAGGAAC AGCAGGCACC TGGAAGCGCT CACAAGACTT CCTTCTGTAC CTCCTTCATC
  CCAAATTATC CCTGTCAAAC TTGTTTTCTT TGAGCTGTGC ATCTGCTCAG GTAGCTGTGT
  GTGCATTTGT GTGTGCGCAT GCACACATGT TCCTATCTGC ATGTCTGCAG ATAGGGGTGG
  CCTATCTCCC ATCAGACTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787319	MGP_WTSI_11_69415158	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249578222					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787319	MGP_WTSI_11_69415158	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69492482 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm72066	predicted gene, 72066			within coordinates
Rr386229	regulatory region 386229			200 bp downstream
Rr450033	regulatory region 450033			1917 bp distal
Rr450035	regulatory region 450035			994 bp distal
Tssr3544	transcription start site region 3544			952 bp upstream
Tssr102487	transcription start site region 102487			1616 bp downstream
Tssr102488	transcription start site region 102488			453 bp downstream
Tssr102489	transcription start site region 102489			407 bp downstream
Tssr108712	transcription start site region 108712			1638 bp upstream
Tssr108713	transcription start site region 108713			1487 bp upstream
Tssr108714	transcription start site region 108714			1419 bp upstream
Tssr108715	transcription start site region 108715			1385 bp upstream
Tssr108716	transcription start site region 108716			1081 bp upstream
Tssr108717	transcription start site region 108717			1067 bp upstream
Tssr108718	transcription start site region 108718			1003 bp upstream
Tssr108719	transcription start site region 108719			1001 bp upstream
Tssr108720	transcription start site region 108720			985 bp upstream
Tssr108721	transcription start site region 108721			976 bp upstream
Tssr108722	transcription start site region 108722			898 bp upstream
Tssr108723	transcription start site region 108723			861 bp upstream
Tssr108724	transcription start site region 108724			815 bp upstream
Tssr108725	transcription start site region 108725			793 bp upstream
Tssr108726	transcription start site region 108726			691 bp upstream
Tssr108727	transcription start site region 108727			670 bp upstream
Tssr108728	transcription start site region 108728			626 bp upstream
Tssr108729	transcription start site region 108729			541 bp upstream
Tssr108730	transcription start site region 108730			509 bp upstream
Tssr108731	transcription start site region 108731			467 bp upstream
Tssr108732	transcription start site region 108732			406 bp upstream
Tssr108733	transcription start site region 108733			796 bp downstream
Tssr108734	transcription start site region 108734			1087 bp downstream
Tssr108735	transcription start site region 108735			1154 bp downstream
Tssr108736	transcription start site region 108736			1192 bp downstream
Tssr108737	transcription start site region 108737			1882 bp downstream