rs249589859 SNP Detail

Summary

• ID
  rs249589859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:75826338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGAAAC TTGATTACTT
  GAATGGGCCC ACCTTTTGCC CAAGGCTCTC CCAACGGAGG CCGGACCCCA CAACCCTGTT
  ATTAGTGGTA CTGTTTCTGG TGGGCTGAAA TGTGGTCAGT CCTGATAGAA TTAGCTACCT
  CTTTGGATCA GGGGACTTTG GTTTGATGTG GCATAGAAGA ATGAACAGCT TGGGGGAGTT
  Y
  GTGAACTCCT ATCTTTAAAG GTATTTGAGC AGTGGCTAGT GGTTTGTGCT GTAGCAGATC
  CTGGCCTTGG ACTGGAACTG TAGCAGACAT GACACCGAGT GTCCTGTGCT CTGTGTGACT
  TTAAAGTCAT CCACCCCGGG CTGTGTGAGT CTGACCTTGT CTTTTTCTCC TTCAGATACT
  GCCCCTGCAG AGACACCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375182982	MGP_WTSI_8_77623609	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249589859					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375182982	MGP_WTSI_8_77623609	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:75826338 () rs orientation: forward

Symbol	Name	Function Class
Hmox1	heme oxygenase 1	within coordinates
Tssr78062	transcription start site region 78062	874 bp downstream
Tssr78063	transcription start site region 78063	167 bp upstream
Tssr78064	transcription start site region 78064	197 bp upstream
Tssr78065	transcription start site region 78065	246 bp upstream
Tssr78066	transcription start site region 78066	296 bp upstream
Tssr78067	transcription start site region 78067	326 bp upstream
Tssr78068	transcription start site region 78068	365 bp upstream
Tssr78069	transcription start site region 78069	410 bp upstream
Tssr78070	transcription start site region 78070	459 bp upstream
Tssr78071	transcription start site region 78071	508 bp upstream
Tssr78072	transcription start site region 78072	529 bp upstream
Tssr78073	transcription start site region 78073	590 bp upstream
Tssr78074	transcription start site region 78074	642 bp upstream
Tssr78075	transcription start site region 78075	667 bp upstream
Tssr78076	transcription start site region 78076	706 bp upstream
Tssr78077	transcription start site region 78077	798 bp upstream
Tssr81819	transcription start site region 81819	862 bp upstream
Tssr81820	transcription start site region 81820	876 bp downstream