rs249590120 SNP Detail

Summary

• ID
  rs249590120
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8857409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATCCACA TCCACAAACA
  CACACACGTA CACATATACA CAAACACACA CACTTCCACA CATACATATG TACCTATAAT
  AATAAACAAT AATAAATAAA AAATGCCAAA AATTAAAATC ACATTCGTAT AGACTATTGG
  TAACTCAAGT CCAACTGTAG ACTTGAGCAA AATGTTGGAG AGAAAGTTGG GTGGTTAAAA
  T
  TTATGCTGCT CTTGCAGATG ACCTGAGTTT GGTTCCCAGC ACCCACATCA GGTAACTCAC
  AACCATAATA ACTTCAGCTC CAGGGGATCC TCTTCTGGAC TGCACAGACC AACACACATA
  CATGTCCACA TATCCATATA TACATAACCA CATAGTCACA TAACTAAAAA ATAAAAATAT
  TTTAAAAAAT TGTGTCTAGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323246147	CHEV_10_8701463	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249590120					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8857409 () rs orientation: forward

Symbol	Name	Function Class
Rr223851	regulatory region 223851	1192 bp proximal
Rr223852	regulatory region 223852	1669 bp proximal