rs249592004 SNP Detail

Summary

• ID
  rs249592004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:66953565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATTTCTT TGCTTAGTTG
  GCTCAAAGAC ATGTTCAAGT TCCGCTTGCC TTTCGTTGTA AGATTCACAC CTTGTAAGAC
  CTGTCTCACT TTGTCATGAT GCACCAGTAC CCACTGATAC ACTACCTTCC TCTTCACCAC
  TCTCACCTGT ACCTTTCTTC CTGTGTCCCC CTCTCCCCCC CCACCCCCCC CACCCCCCGG
  Y
  CCCACTAACT GTCCCAGCTC CAGTAATACC TCCTGTTTCA CTTCGGCATG GCACTTCTGG
  GAGCTAGAGA GGTTGCTTTC TGTGTAAACT CGAGGACTCA CATCCCCAAG TTAACTAGCT
  GGGTGTCATG CTTGTAACTC CAGCTCCCAG GGATCCAGTG CCTCCTTCTG GTCTCTCTGC
  CCAGGCCTAG GTGTGCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323345133	CHEV_10_66580534	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249592004					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:66953565 () rs orientation: forward

Symbol	Name	Function Class
Gm65987	predicted gene, 65987	1675 bp upstream
Gm67716	predicted gene, 67716	803 bp downstream
Jmjd1c	jumonji domain containing 1C	within coordinates
Rr215833	regulatory region 215833	36 bp proximal
Tssr93804	transcription start site region 93804	1713 bp upstream