rs249593579 SNP Detail

Summary

• ID
  rs249593579
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGGCGT ACCACTGCCT
  TGCAGTAGCA CTGGGCCCCC ACCAGGGGCG CTGTGCCCCT ATTTAGTGTG TCAGATGCCA
  GGTAGCAGGA CAGAGGGTAG GTGGCTTCCC CTCAGCAGTA GCGCGCAGTC CTCCATGTCA
  CCAGCCAGCA GGGTCCTTGT AACAGTCTGC TCTTGTCTCC ATAGCTTATC ATGTCCAGAG
  C
  CGCCCACAGT TTGCTGCAGA TCTGTTGCTC ACTGTGCAGT TTGAATGAGA TGTCTCCAGG
  TCTCTGGCAT CGAGAACACA GTCCCCAGGG GTGGCAATGT TTGAGAGGTT TAAGAGGCAT
  GGCCTTGTTA GTGGAAGCAC ACCACACTGG AGAAGATCTC TGTGAGTTCA AACACTCACA
  GCATTTTGAG GTCATTTCTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321435525	CHEV_4_152022078	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249593579					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	733 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	within coordinates
Rr93365	regulatory region 93365	426 bp distal
Rr97434	regulatory region 97434	within coordinates