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rs249593802 SNP Detail
Summary
  • ID
    rs249593802
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:69299974 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAACAGCAAG CTAAGACTGA
GAGTGAGGAA ACCATTCACG AGCCGACCTG AGGGCAAGCC TCACACATCC ACCGAACTGG
CAATGGTCCC CGCCAGACTG TTCAAGTTGT CCTCTGCCTA TCCACCCCAA GGACGGACAG
CAGACCAAGG CGAAACGCAG ACAAAGGCAT CACTAGCTCT CCTTACTTCA CATCACTCAG
Y
GATTGACTCT CCACTCGATC ACCCCGGTAG AAATCTCGCA ATCAGCAAAT CCAGCACCCA
GGCCCTCCCG CGCCTCTATC AGAATGCTCC ACCTCCAGCG CCTGACCCCG TCCTATATCA
TGGTCAAGTC CCCAGTCTCA TACCAAGTTC CTCCAGCTCC TCCACTTTCC CCGGCTCTGA
GTCTTCAGTA TCGGTCGACC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383783463 MGP_WTSI_11_69222650 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs249593802 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383783463 MGP_WTSI_11_69222650 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:69299974 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi3128 CpG island 3128 within coordinates
Gm72933 predicted gene, 72933 606 bp downstream
Kdm6b KDM1 lysine (K)-specific demethylase 6B within coordinates
Rr247028 regulatory region 247028 within coordinates
Rr369256 regulatory region 369256 726 bp upstream
Rr402670 regulatory region 402670 252 bp downstream
Rr402671 regulatory region 402671 211 bp upstream
Tssr3543 transcription start site region 3543 424 bp upstream
Tssr102456 transcription start site region 102456 204 bp downstream
Tssr102457 transcription start site region 102457 133 bp upstream
Tssr102458 transcription start site region 102458 526 bp upstream
Tssr102459 transcription start site region 102459 546 bp upstream
Tssr102460 transcription start site region 102460 579 bp upstream
Tssr102461 transcription start site region 102461 622 bp upstream
Tssr102462 transcription start site region 102462 650 bp upstream
Tssr102463 transcription start site region 102463 1403 bp upstream
Tssr102464 transcription start site region 102464 1677 bp upstream
Tssr102465 transcription start site region 102465 1796 bp upstream
Tssr102466 transcription start site region 102466 1953 bp upstream
Tssr108662 transcription start site region 108662 1528 bp upstream
Tssr108663 transcription start site region 108663 1499 bp upstream
Tssr108664 transcription start site region 108664 1317 bp upstream
Tssr108665 transcription start site region 108665 586 bp upstream
Tssr108666 transcription start site region 108666 within coordinates
Tssr108667 transcription start site region 108667 244 bp downstream
Tssr108668 transcription start site region 108668 265 bp downstream
Tssr108669 transcription start site region 108669 280 bp downstream
Tssr108670 transcription start site region 108670 399 bp downstream
Tssr108671 transcription start site region 108671 736 bp downstream
Tssr108672 transcription start site region 108672 1220 bp downstream
Tssr108673 transcription start site region 108673 1248 bp downstream
Tssr108674 transcription start site region 108674 1292 bp downstream
Tssr108675 transcription start site region 108675 1459 bp downstream
Tssr108676 transcription start site region 108676 1504 bp downstream
Tssr108677 transcription start site region 108677 1548 bp downstream
Tssr108678 transcription start site region 108678 1564 bp downstream
Tssr108679 transcription start site region 108679 1863 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory