rs249610644 SNP Detail

Summary

• ID
  rs249610644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47259877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCGCGGG CTGCCCGGGC GGGGTCTCGG GGGGTCTGCG
  GTCCGCGGGA GGACCCGGGT CGCGGCGTCC GGCGGGTGGC TGGGTGGGTG CACGGGGTGG
  Y
  GGGCGGGCGC GAGCCGGGGC CTCCGCGCTG AACGGTTGGA CGCTAGGGGG CCTGCGAGCT
  TCCAGCCTCC CGATCCCGGG AGAAAAATGA CCGGCCGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324335499	CHEV_13_47201769	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249610644					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47259877 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	200 bp upstream
Rr479039	regulatory region 479039	within coordinates
Rr479040	regulatory region 479040	36 bp proximal
Tssr119626	transcription start site region 119626	809 bp downstream
Tssr119627	transcription start site region 119627	within coordinates
Tssr119628	transcription start site region 119628	12 bp upstream
Tssr122369	transcription start site region 122369	1024 bp upstream
Tssr122370	transcription start site region 122370	877 bp upstream
Tssr122371	transcription start site region 122371	779 bp upstream
Tssr122372	transcription start site region 122372	699 bp upstream
Tssr122373	transcription start site region 122373	654 bp upstream
Tssr122374	transcription start site region 122374	526 bp upstream
Tssr122375	transcription start site region 122375	291 bp upstream
Tssr122376	transcription start site region 122376	273 bp upstream
Tssr122377	transcription start site region 122377	230 bp upstream
Tssr122378	transcription start site region 122378	195 bp upstream
Tssr122379	transcription start site region 122379	180 bp upstream
Tssr122380	transcription start site region 122380	168 bp upstream