rs249613219 SNP Detail

Summary

• ID
  rs249613219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32248229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAAAAAC TTACTTTCTT
  TGTACTGTTG CTTTCGTTTC TTCTGGCCTG TTATTTGTGC TCAGCTATTG GCTGACTACC
  CTATGGTTTA CACAGCTCAC TGCTTAAAGG TATATCCCTT TTGTTTAGTG ACAGGGTCTG
  AGAAATTTCA AGTGTACATG AAAGTAGAGC AAGGAGTTTC AGCCAGGTGG TGCTGTCACA
  Y
  GCCTTTAATC CCAGCACCCA AGAGGCAGAA GCAGGTGGAT CTCTGTGAAT TATACATTAG
  CCTGCTCTAT ACAGAGACAC CCTGTCTAGA AAATAACCAC CACCATAAAA AGATTCCTAG
  GTTTCTATGT TAGCTACAGT CTAAACTACT ACCTTTGTGA TGCCCATCTT CCCCAGAGAG
  GCCCTTGGTG TCTCCTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395858311	MGP_WTSI_16_32429497	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249613219					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395858311	MGP_WTSI_16_32429497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32248229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	1010 bp proximal
Dynlt2b	dynein light chain Tctex-type 2B	312 bp downstream
Gm53948	predicted gene, 53948	147 bp upstream
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	1510 bp upstream
Rr404779	regulatory region 404779	1344 bp upstream
Rr514694	regulatory region 514694	4 bp distal
Rr514695	regulatory region 514695	731 bp proximal
Rr514696	regulatory region 514696	1258 bp proximal
Rr514697	regulatory region 514697	1317 bp proximal
Rr514698	regulatory region 514698	1849 bp proximal
Tssr137979	transcription start site region 137979	1196 bp upstream
Tssr137980	transcription start site region 137980	1484 bp upstream
Tssr137981	transcription start site region 137981	1574 bp upstream
Tssr137982	transcription start site region 137982	1612 bp upstream
Tssr137983	transcription start site region 137983	1632 bp upstream
Tssr137984	transcription start site region 137984	1681 bp upstream
Tssr137985	transcription start site region 137985	1814 bp upstream
Tssr137986	transcription start site region 137986	1879 bp upstream
Tssr140804	transcription start site region 140804	1667 bp downstream