rs249616742 SNP Detail

Summary

• ID
  rs249616742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69343077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAAGAAA CAGAATCTGC
  CTGGTGGAGC ACACCTTTTA TCCCAGCGCT TTAATCTCAA ACCCCAGACC CTTAACTCTT
  GTGTTTCAGC AAGTACATCT CCAGCAACTG GTGAGAGTTT CAAAGAGAAA AGCTTTTTTT
  GGTCGTTTTT GTTAAGTGTG TATTTTGCTC AGTATATATT TAGCAGTCCC AAAACGAAGA
  R
  AGGGAGAAAG AAAAAAAAAA AAGACAAGAT GAGCAGCACG GAGAGCCACC ATTTAAATGA
  GGAGCCTGAA GTGTTTTCCA GACCAGCCTT ATTTTATGGG CGAGGAATTG GGTTTAAATA
  ATTCGTAATT TTCATTTGGC CTCTTAGAAG CCCAGATTGT GAGTCTGGGA TTCGCATTCT
  TTCCCCAAGG GTGGGTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324083692	CHEV_12_70397290	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249616742					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69343077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	115 bp proximal
Klhdc2	kelch domain containing 2	378 bp upstream
Rr467019	regulatory region 467019	1711 bp distal
Rr467020	regulatory region 467020	within coordinates
Rr467021	regulatory region 467021	430 bp proximal
Tssr113629	transcription start site region 113629	311 bp downstream
Tssr113630	transcription start site region 113630	373 bp upstream
Tssr113631	transcription start site region 113631	528 bp upstream
Tssr113632	transcription start site region 113632	625 bp upstream
Tssr113633	transcription start site region 113633	635 bp upstream
Tssr113634	transcription start site region 113634	661 bp upstream
Tssr113635	transcription start site region 113635	669 bp upstream
Tssr113636	transcription start site region 113636	1096 bp upstream
Tssr116496	transcription start site region 116496	931 bp downstream