rs249617383 SNP Detail

Summary

• ID
  rs249617383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58970762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCGGGAGT CGCTGAACGC
  CACGGGCCTC AGCGGGGGCA GCTCAGACCC GGGATCCGGG CGCAGCTCTG GGGGCGGCGG
  CCGGGGGCAG GCTTCGGGCA GCTCGCGGGA GGTGCGCTCG GTGGCCCGAG CACCGCAGGA
  AGAAGCCACC AGAGGCCAAT CTGAGCCCTG GTTCGGGTCT CCCCTGGAGC CAGGTGCTGA
  R
  GACGAGGAGG AACTCGAATC TCAGGAGCTG CCTCGGGGAT CCAGCGGAGA TACTGCCCTG
  TCCTCGGGAA CCCCGGCCTC GTGGCAGCCT CCTCTGCCCC CGCAACGGCC CTCGTCCCCG
  CCCCCTGCCC AGCAAGAGGA ACCCAGCGCG GAGGAGGTGC TGTTGCGGAT CCCGGCCCTC
  TCCCGGGACC TGTACCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400815231	MGP_WTSI_18_58997344	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249617383					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400815231	MGP_WTSI_18_58997344	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58970762 () rs orientation: forward

Symbol	Name	Function Class
Adamts19	ADAM metallopeptidase with thrombospondin type 1 motif 19	within coordinates
Cpgi10085	CpG island 10085	within coordinates
Rr538499	regulatory region 538499	1013 bp distal
Tssr151225	transcription start site region 151225	1508 bp downstream
Tssr151226	transcription start site region 151226	1481 bp downstream
Tssr151227	transcription start site region 151227	1351 bp downstream
Tssr151228	transcription start site region 151228	1316 bp downstream
Tssr151229	transcription start site region 151229	1294 bp downstream
Tssr151230	transcription start site region 151230	939 bp downstream