rs249621153 SNP Detail

Summary

• ID
  rs249621153
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:71956973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAACCTGT GCCATGTGAG
  TGAGGGTGGC TGGAAGTCAC TCACCCAGAT CTGTTGGGCC TTGTCCCCTT CTCCAAGGAT
  GAGCTGCTCT GTGGTCTGGG AGTTGTTCTG AGGACTCTGA GACTTAAAGA CACTCGCTTG
  AGATTTTGAT CCTCGGGTGC TCAGTAAATA CTTGCCTTTT GAATTTTTGT GCTTCCCCCC
  Y
  CTCCCCGCCC CTGTCTTGCT CCCTTCTGGC TTTGTCGGTT TTGCTGCCCC CCACCCCCAC
  CCTTACCCCA CCCCCACCCT ACTCCCATTT TCATCCTGTG CTCTGAGAGC CTATGGGTGG
  CTACAGAAGA CTCTGGGAAG ATCGGGAATC ACCTTTCCTG GGAGCAGTAG TTTTGAGAAG
  AGATACAGGA GTTTCTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss371852447	MGP_WTSI_7_79452111	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	T	C	T	C	T	T	T	C	T	C	C	C	T	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249621153					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	T	C	T	C	T	T	T	C	T	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371852447	MGP_WTSI_7_79452111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:71956973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19258	CpG island 19258	271 bp distal
Gm39035	predicted gene, 39035	within coordinates
Mctp2	multiple C2 domains, transmembrane 2	617 bp upstream
Rr165673	regulatory region 165673	819 bp proximal
Rr167990	regulatory region 167990	within coordinates
Tssr67176	transcription start site region 67176	311 bp downstream
Tssr72929	transcription start site region 72929	578 bp upstream
Tssr72930	transcription start site region 72930	470 bp upstream