rs249623170 SNP Detail

Summary

• ID
  rs249623170
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43628214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCATA AGCACAGAGG
  AGGCAGGGCT GGGGAGAGCA AAGGAGGATG GCACACCAAA ACAAAGACTG TAGGAAGAAA
  CCACTTTGAA ACTTACTACT TTGTAAGTAG TGAGGAGAAA AAGCCCCCAG AGCTAGGAGA
  AAGATTCTGT CACAGAGCTG TTGGTCACGG AGACTCCAGA GGCCCCCAAA GCAACATAAT
  M
  AGCCCTTTAA GTTGCCTACC AAAACCCAGG TTTTGTTTGA TATTTAGTCT AAGGATCTAT
  TCCTTGTGGG GTTTTTGTTT GGTTGGTTTG GTTTGCTTTG GGTTTGTGTG TGTGTGTGTA
  TGTGTGTGTG TGTGTGTTTG GGATTTTTAG TTGTTTGCTT TTGTTTTTTT GTTTGTTTGT
  TTCTTTGTTT GTTTGTTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320269119	CHEV_2_43593722	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249623170					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43628214 () rs orientation: forward

Symbol	Name	Function Class
Rr556296	regulatory region 556296	within coordinates
Rr556297	regulatory region 556297	179 bp proximal
Tssr17595	transcription start site region 17595	1322 bp upstream
Tssr23873	transcription start site region 23873	473 bp downstream
Tssr23874	transcription start site region 23874	814 bp downstream