rs249623879 SNP Detail

Summary

• ID
  rs249623879
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137590886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGGTCTCTC TGGAGACCGA TGACTTAATT CTCCCGCCCC
  CCCAAGGTGC CCAGAGATCA TCTTGGACCC GACTTACCTC CCCCATTAAG AATCTCCCAA
  A
  AGCTGGACAG TGGTGGCGCT CACCTTTAAT CCCAGCACTT ATGAGGCAGA GGCAGGAGGA
  TTTCTGAGTT CGAGGCCAGC CTGGTCTGCA GAGTGAGTT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321368361	CHEV_4_137419490	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249623879					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137590886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	721 bp distal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602748	regulatory region 602748	1328 bp distal
Rr602749	regulatory region 602749	161 bp distal
Rr602750	regulatory region 602750	1145 bp proximal
Tssr39783	transcription start site region 39783	1326 bp downstream
Tssr39784	transcription start site region 39784	1307 bp downstream
Tssr39785	transcription start site region 39785	1254 bp downstream
Tssr44151	transcription start site region 44151	1466 bp upstream