rs249624116 SNP Detail

Summary

• ID
  rs249624116
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13089036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCTTTC CCTGGGTAGG
  GACCTTTAAG CACCTGCTCT TTCCAGGCCT AGGAACAGCC TTGGGCAGAC AGGCCAAATG
  CCTTTGTAGA AGCACATTCT CACTGAGGCA AAAGAAGATG ACCAGGAGAT AAATGACATC
  AGAGAGTGGC TGGTACTGTG ACCAGCGTCA AGACAGGGGG AAGGGAGGGG GCGTGAAGCT
  R
  GTGAGGATGC TGGCCCTCCT GAAGGGTCAT GCAATAGAGT TATCCATGCG TGCAACTGGA
  TAGGCACACC AGCCACTCTT GCGTCCCCTG GCATGGACAA CTTAAGGGTT TATGATTTCA
  GAGGCCTTAG ACTGTCATGG CAGAGAGGGT GTGACAGGAT GGAGCCGCTC CTGCTGTGGC
  CACCAGGCAG CAGAGGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373736751	MGP_WTSI_8_13039036	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249624116					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373736751	MGP_WTSI_8_13039036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13089036 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1704 bp distal
Rr659844	regulatory region 659844	1188 bp distal
Rr659845	regulatory region 659845	408 bp distal
Rr659846	regulatory region 659846	1518 bp proximal
Tssr76325	transcription start site region 76325	1733 bp downstream
Tssr76326	transcription start site region 76326	1684 bp downstream
Tssr76327	transcription start site region 76327	1674 bp downstream
Tssr76328	transcription start site region 76328	1646 bp downstream
Tssr76329	transcription start site region 76329	1198 bp downstream
Tssr76330	transcription start site region 76330	1051 bp downstream
Tssr76331	transcription start site region 76331	267 bp upstream
Tssr76332	transcription start site region 76332	290 bp upstream
Tssr76333	transcription start site region 76333	322 bp upstream
Tssr76334	transcription start site region 76334	333 bp upstream
Tssr76335	transcription start site region 76335	501 bp upstream