rs249627530 SNP Detail

Summary

• ID
  rs249627530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85531172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCTAA GGGACCAAAC
  TCAAGTCACC AGCATTGATC TACAAGAGCT TTACTGGCTG AGCAGTCATC ATCCTAAAAA
  AAAATAAAGA TGTATTATTT ACGTATATAG GTACTTTGTC TGCATGTCCA TCTGCCCAGC
  AGAAGGTGGC ATCAGACAAG CCTGAGCTGT CATGTGGATG CTGGGACTTG AACTCAGGAC
  Y
  TTCAGAAGAG CAGTGTGTTC TTGACCATTG AGCCCCCAGC TGAACTATCT TGCTGGCCCC
  TTTAAACCAA TTTTGTTTGT TTGTTGACAA AGGGTCTTAT CATTTAATCT TGGCTGGTCT
  GGAAATTGGT AGCAGACCAG ACTGGCCTTG AACTATAGAG ATCCTACTGC CTCTACCTCC
  TGAGTGCTAC CATGTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386736535	MGP_WTSI_12_86825348	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249627530					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386736535	MGP_WTSI_12_86825348	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85531172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4899	CpG island 4899	1417 bp proximal
Gm56541	predicted gene, 56541	within coordinates
Gm60138	predicted gene, 60138	1080 bp upstream
Rr469910	regulatory region 469910	984 bp distal
Rr469911	regulatory region 469911	981 bp proximal
Rr469912	regulatory region 469912	1614 bp proximal
Tssr114406	transcription start site region 114406	1831 bp upstream
Tssr114407	transcription start site region 114407	1873 bp upstream
Tssr117091	transcription start site region 117091	1393 bp downstream
Tssr117092	transcription start site region 117092	1530 bp downstream
Tssr117093	transcription start site region 117093	1557 bp downstream
Tssr117094	transcription start site region 117094	1582 bp downstream