rs249627821 SNP Detail

Summary

• ID
  rs249627821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19241307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTAGCAG TAAATCCTAC
  AAGTATCATT GGAATGGTCG CCCTGGTGTG TGGTCCCTAC CAGTTCACTT CAGCAGCTTT
  TGTCTTTTCA TCAGCCTTCA GACCAAGCAC CCCTCCCTGA ACTGCTCTCT CAGGCTTCTC
  TCTCCCAGCC TTGGTCACAG CCTGTCAGGC CCTTTTGTAC TTAAAACGTT ATAACACTTG
  R
  TCACATATAT TAATTAACCT TGTTTTGATC TCCCTGCCTT TTGGTAGGCT TACTCAGGGT
  GTGGTTCAAG GCTTAAAAAA CAAACAAACA AACAAACAAA CCCCACCAAC TTTGTACTGT
  CATAATGGGC TCCCAACGAG CCGTTGCTGA GTAACTGAAT TGAAGCTCTA GGTGAAATCC
  AAAGCAGTAG CCAGGAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357150154	MGP_WTSI_3_19087143	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249627821					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357150154	MGP_WTSI_3_19087143	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19241307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13001	CpG island 13001	612 bp proximal
Mtfr1	mitochondrial fission regulator 1	184 bp upstream
Rr397614	regulatory region 397614	843 bp upstream
Tssr28500	transcription start site region 28500	159 bp upstream
Tssr28501	transcription start site region 28501	178 bp upstream
Tssr28502	transcription start site region 28502	216 bp upstream
Tssr28503	transcription start site region 28503	223 bp upstream
Tssr28504	transcription start site region 28504	942 bp upstream
Tssr28505	transcription start site region 28505	956 bp upstream
Tssr28506	transcription start site region 28506	969 bp upstream
Tssr28507	transcription start site region 28507	1071 bp upstream
Tssr28508	transcription start site region 28508	1083 bp upstream
Tssr28509	transcription start site region 28509	1145 bp upstream