rs249628654 SNP Detail

Summary

• ID
  rs249628654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:22199401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttgctttt tAAATGTGCT GCACAGCACT
  TAGGTGGCCA TAAGCAAATA CGATCCTTCA TCTTAGAATT GTGATATGGC CTTCAGTGTG
  TTGCTAGGAA ATCCTTTCGT TTAGGTTAAA CTACCTGTAC ACAGCTGTGT CTATCTGCTT
  Y
  TTCCCCCCCC GACagacagg gtctctctgt atagccctgg ctgtactgga actcactttg
  tagaccacgc tggcctcgaa ctcagaaatc tgcctgcctc tgcttcctgg ctctctgtct
  gctttttact gaagatgaac ttgctcttga                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320684112	CHEV_3_22044159	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249628654					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:22199401 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr574213	regulatory region 574213			1524 bp distal
Rr574214	regulatory region 574214			1771 bp distal
Rr574215	regulatory region 574215			688 bp distal
Rr574216	regulatory region 574216			772 bp distal
Tbl1xr1	transducin (beta)-like 1X-linked receptor 1			Intron
				Noncoding-Transcript-Variant