rs249629046 SNP Detail

Summary

• ID
  rs249629046
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGAGGG GCCTTATCCG
  CAAGCAGACA CACACAGTGG GCTCATGAGA AGGTGACACT GTGCATAGCC CTTCTTGCTG
  GAGGGAAGCC CTCCAGCCTT CTCTACTACA TACCTGATGG ATCCTGTATT GGGCCATCCA
  TCTTCTCTCT ACAATAATAA AAACTAGTGT TTTCCAAGGA ATGTTTTCTA GTATGCTAAT
  W
  CAGGATGAGC ATCTCCAACC CAAAACTCTA AAATCTAGAC GTCTCCAAAG TAGAGAACTT
  TCTGACATAA TGTGACCCAT CCAAAATTCT ACACAGTAGA ACCTTGTTGC ATGCACAAAA
  CTACTTAAAA TGCTATAGAA AACTGCCTTT AGGTATGTGT ATAAGATGAT CATGAAACAG
  ACAGAATTCA AGTTTAGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864895	CHEV_3_107043924	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249629046					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148322 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	860 bp upstream
Prok1	prokineticin 1	1299 bp upstream
Rr582947	regulatory region 582947	518 bp proximal
Rr582948	regulatory region 582948	871 bp proximal
Tssr31192	transcription start site region 31192	783 bp upstream
Tssr31193	transcription start site region 31193	854 bp upstream
Tssr31194	transcription start site region 31194	909 bp upstream