rs249632404 SNP Detail

Summary

• ID
  rs249632404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166557431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTAGCTGG TAGCAGTCAC
  GAGCCAGCCA AATCCAGCTG CCTGGGTGAC CTTGGCCAAG ACACTTCACC TTTCTGAAGC
  TCCATTTTTT TTTTTTTAAT CTGTAAGATG AGAGTCTGAG GGAACAAACC CAGGATTAGT
  GACATCTAGG GTCAGGTTAG TTCTCCATTG TAAGAGCATA GCAGCACACA GTACCCGGGA
  Y
  GTCCCAGGAG CACCCCGTCC ACAGTTGTGA GCCGTCGGTG CCTTCTAAGG TAGCCAGAGA
  ACCTCTGACA CACGCAACAC AGCTAGCTGG GTTAGGTAGT GCTAAGTAAA CACTAGTCCC
  CTTCTCAGCC TGTGACCAAG GCTGGAGGTT AGCCTCACAT TTACACATGG GTCCCACCCT
  CCAAACAAGA ACTGACTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356490324	MGP_WTSI_2_166541011	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249632404					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356490324	MGP_WTSI_2_166541011	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166557431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12723	CpG island 12723	884 bp distal
Gm46777	predicted gene, 46777	1612 bp upstream
Gm57440	predicted gene, 57440	529 bp downstream
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	1679 bp upstream
Rr397493	regulatory region 397493	1438 bp downstream
Rr570356	regulatory region 570356	1734 bp distal
Rr570357	regulatory region 570357	1189 bp distal
Tssr21773	transcription start site region 21773	1395 bp downstream
Tssr27709	transcription start site region 27709	1768 bp upstream
Tssr27710	transcription start site region 27710	1684 bp upstream