rs249639592 SNP Detail

Summary

• ID
  rs249639592
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:80634432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGACATA CTAAGCGTGA
  GGTGTAAGTT AGACTCAGAG CACTCCACGA TGAGCGAAGC GCCTTCCTGG GCCGGTGAAC
  CCTAACGCTT TCCTCTTGTC ACGATAGCCG GCGCCGCTAG ACTTAGGGCG GAGCGAAACT
  GTGCGGTCGC TGCAGTGAGC ACGCGCACTC TGCGCCCCGA CGCTCCTTTC TCTCCCGCCT
  M
  CCGAAGACGG AAGTCCATCC GCTGGGCCTG CGCACACACG AAACGCCGAC GCCTTTGCTC
  CCGGAAGGGA TCGCTTCGTC GGTCGTGCGC ACGCGCGCGG CGAAACCGCG GCCTTGGCGG
  AGATTAAACC CGGATAGCGA GGCCTTAGCG TTGGTGAGGA GCTGCACAGT TTGTCGGTGG
  CGGCTGCTCC GTCGGGGAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025195	MGP_WTSI_10_80261343	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249639592					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025195	MGP_WTSI_10_80261343	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80634432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	within coordinates
Plekhj1	pleckstrin homology domain containing, family J member 1	mRNA-UTR
Rr435393	regulatory region 435393	390 bp distal
Rr435394	regulatory region 435394	within coordinates
Rr435395	regulatory region 435395	18 bp proximal
Rr435396	regulatory region 435396	145 bp proximal
Sf3a2	splicing factor 3a, subunit 2	mRNA-UTR
Tssr94606	transcription start site region 94606	631 bp downstream
Tssr94607	transcription start site region 94607	488 bp downstream
Tssr94608	transcription start site region 94608	15 bp upstream
Tssr94609	transcription start site region 94609	32 bp upstream
Tssr94610	transcription start site region 94610	54 bp upstream
Tssr94611	transcription start site region 94611	304 bp upstream
Tssr98507	transcription start site region 98507	707 bp upstream
Tssr98508	transcription start site region 98508	648 bp upstream
Tssr98509	transcription start site region 98509	608 bp upstream
Tssr98510	transcription start site region 98510	595 bp upstream
Tssr98511	transcription start site region 98511	382 bp upstream
Tssr98512	transcription start site region 98512	299 bp upstream
Tssr98513	transcription start site region 98513	22 bp upstream
Tssr98514	transcription start site region 98514	257 bp downstream