rs249646837 SNP Detail

Summary

• ID
  rs249646837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142132324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCAGATA TCTCCCTTGA
  TGTCGAGAAC ATATAGCCCC GTAGCCTGCT GAAGCCCTTC ATAGAACGGT GGTGCCCCAG
  GCACCCTGCC ACACTGAAGC TGCCCTTTAC TCAGTTTGTA TAATGACCAC AATGGGAATT
  TGAGGGCATG GGTCTCATAC TATCCCACGG AGTATGAACA GCCTACGAGT GGCTAACCCC
  Y
  AGCCTTTGTC CTAGTCTGCT TGACTGACCT TATCTGGCCG CAGTGGTTTC AACAAGGTAG
  TAGCTAATTT GGGCACTCCT CACCGTCCCT TTTCTGGGTG AGTCGTCACG TTTGTCAGGA
  CTCTCTTGCG ATGAGTTTTA TTAGTTATCT TACAGTCTGG TCTTGGTCAC CCCAGTCAAC
  CGGAGGCACA GTATGGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453182	MGP_WTSI_7_149764492	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249646837					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453182	MGP_WTSI_7_149764492	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142132324 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1725 bp proximal
Gm56420	predicted gene, 56420	1664 bp downstream
Gm56421	predicted gene, 56421	669 bp downstream
H19	H19, imprinted maternally expressed transcript	441 bp upstream
Mir675	microRNA 675	1440 bp upstream
Rr27	regulatory region 27	1561 bp proximal
Rr370601	regulatory region 370601	1661 bp upstream
Rr658231	regulatory region 658231	within coordinates
Rr658232	regulatory region 658232	672 bp proximal
Rr658233	regulatory region 658233	1283 bp proximal
Rr658234	regulatory region 658234	1623 bp proximal
Rr658235	regulatory region 658235	1719 bp proximal
Tssr2460	transcription start site region 2460	1327 bp downstream
Tssr2461	transcription start site region 2461	661 bp downstream
Tssr70214	transcription start site region 70214	1934 bp downstream
Tssr70215	transcription start site region 70215	1611 bp downstream
Tssr70216	transcription start site region 70216	1547 bp downstream
Tssr70217	transcription start site region 70217	1530 bp downstream
Tssr70218	transcription start site region 70218	1180 bp downstream
Tssr70219	transcription start site region 70219	1142 bp downstream
Tssr70220	transcription start site region 70220	1030 bp downstream
Tssr70221	transcription start site region 70221	991 bp downstream
Tssr70222	transcription start site region 70222	933 bp downstream
Tssr70223	transcription start site region 70223	791 bp downstream
Tssr70224	transcription start site region 70224	746 bp downstream
Tssr70225	transcription start site region 70225	708 bp downstream
Tssr70226	transcription start site region 70226	613 bp downstream
Tssr70227	transcription start site region 70227	531 bp downstream
Tssr70228	transcription start site region 70228	518 bp downstream
Tssr75825	transcription start site region 75825	1899 bp upstream
Tssr75826	transcription start site region 75826	1851 bp upstream
Tssr75827	transcription start site region 75827	1831 bp upstream
Tssr75828	transcription start site region 75828	1699 bp upstream
Tssr75829	transcription start site region 75829	1209 bp upstream
Tssr75830	transcription start site region 75830	1182 bp upstream
Tssr75831	transcription start site region 75831	1161 bp upstream
Tssr75832	transcription start site region 75832	1095 bp upstream
Tssr75833	transcription start site region 75833	1018 bp upstream
Tssr75834	transcription start site region 75834	744 bp upstream
Tssr75835	transcription start site region 75835	712 bp upstream
Tssr75836	transcription start site region 75836	690 bp upstream
Tssr75837	transcription start site region 75837	667 bp upstream
Tssr75838	transcription start site region 75838	597 bp upstream
Tssr75839	transcription start site region 75839	575 bp upstream
Tssr75840	transcription start site region 75840	546 bp upstream
Tssr75841	transcription start site region 75841	519 bp upstream
Tssr75842	transcription start site region 75842	502 bp upstream
Tssr75843	transcription start site region 75843	496 bp upstream
Tssr75844	transcription start site region 75844	466 bp upstream
Tssr75845	transcription start site region 75845	433 bp upstream