rs249655012 SNP Detail

Summary

• ID
  rs249655012
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151963981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AATTTGATG GGGTGTAAAG AGAGTTTATA
  TTCCAAGTGA GCTGCAAGCT AAAGGCCAGA GGCACCTCAG CCCTCTTGAG ACATCCTCCC
  ATCTAAGGGG TCCAGAGCAC TTGTGTTTCT GTGCTTGAAA CCTAGCTCGC ACAGTACCAC
  M
  CACTAGAACG CTGAGCGCCT GATCTCGGAA GTACTAGTGC CAGCATTTAA TGGCTTTAAA
  TGTGCCGGGC TGTTCCATCC CAGGGACCCT TCCTACTTGT TAAGTAGGGG GACAAAAACA
  GATGATGGAG TCCAGATGAA TTTCCAAATC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320062290	CHEV_1_153935360	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249655012					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151963981 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Cpgi853	CpG island 853	1378 bp proximal
Rr420417	regulatory region 420417	302 bp proximal
Rr420418	regulatory region 420418	1885 bp proximal
Tssr14207	transcription start site region 14207	1915 bp downstream
Tssr14208	transcription start site region 14208	1951 bp downstream