rs249660838 SNP Detail

Summary

• ID
  rs249660838
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91178613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGCCACG GCGACGGCGG
  GGAGGAGGGG CGGCCGGCCC GCCTGGCCCG GTTCGGTCCC TGACCCGGTT CCGCGGCGTG
  TCACCCGGGG TGTGGCCTTC TCCTCGGCCG GCTCAGTTTC CTCCGTCTCC GGTGGGCATT
  GGACCCACTC CTCGGCGCTG CCGGTGGGTT GGAGTTGCTG GGGAAGGCTT CCCGGAGGGG
  M
  TCTTGGCCTG TGGGTAAAAA TCTGCTCTCC TTAAGAACCT AGTCGGGCTT GGCGGTGAAG
  GGAAAGAGGG CATCCCAAGA CCTGGTTATC AGATTGAACC GAAGGTTCCA GAAATGAGCA
  GGGTGGTGTT GAAAAACAGT GAGGTGGCTG GGCCTGGTGC CGAGGCTTCC TAGCTGTTTG
  GGCCGAATGT GGGGAGCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350472934	MGP_WTSI_1_93147468	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249660838					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350472934	MGP_WTSI_1_93147468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91178613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	within coordinates
Rr366958	regulatory region 366958	645 bp downstream
Rr415586	regulatory region 415586	1555 bp distal
Rr415587	regulatory region 415587	315 bp distal
Rr415588	regulatory region 415588	within coordinates
Rr415589	regulatory region 415589	972 bp proximal
Tssr8065	transcription start site region 8065	675 bp downstream
Tssr8066	transcription start site region 8066	581 bp downstream
Tssr8067	transcription start site region 8067	511 bp downstream
Tssr8068	transcription start site region 8068	383 bp downstream
Tssr8069	transcription start site region 8069	305 bp downstream
Tssr12938	transcription start site region 12938	816 bp upstream
Tssr12939	transcription start site region 12939	481 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates