rs249664604 SNP Detail

Summary

• ID
  rs249664604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116387581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAGGCT AAGGCAGGAG
  AATTCCTGGG ATCAGATGTT CAAGACCAAT ATGAGCAATT CAGCAAGATC CCCATCTCAA
  AAACAGAAAG TTGTCTTTCA AGGGAAATAG TACTCTAACT TTCAAAGCGT AATCACAGAA
  CACACACACA CACACACACA CACACACACA CACATTTTTA AAATCTATTG TTTGAGTTTA
  R
  AAACAGTGTA TAGCAGGTTA GTAAAATGTT TTCTTTTTTG GTGTAGAGGG TAATGAGGCT
  TCCTGTGACT TTAGACTTAA CTCTCCAGGA AAACACCTTA TGAACTTGTA ATTATTATTC
  TGGGACGGAG AAGGAAAAAT AAACGTAAAA TAACAAACTT CAAAGTTGAA AGCAAAGTTT
  TTTGTTTTGT TTTGTTTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895799	CHEV_3_116296850	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249664604					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116387581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	544 bp proximal
Rr397965	regulatory region 397965	831 bp upstream
Rr583746	regulatory region 583746	518 bp proximal
Rr583747	regulatory region 583747	815 bp proximal
Rr583748	regulatory region 583748	896 bp proximal
Rr583749	regulatory region 583749	1089 bp proximal
Rr583750	regulatory region 583750	1257 bp proximal
Sass6	SAS-6 centriolar assembly protein	1050 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1027 bp upstream
Tssr35316	transcription start site region 35316	884 bp downstream
Tssr35317	transcription start site region 35317	916 bp downstream