rs249665664 SNP Detail

Summary

• ID
  rs249665664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26493670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGATC TCACACACCT
  CCTGTGCATG CACAAGGCGG GGGGTGGGGG GGTACATTTA GAATGGTGGC TCATTTCCCA
  AGCAGATTCT CATCATGTTC TACTTTAATC AGGGAAAGAG ACATGCAGCT TCCCTCAGCC
  AGGAGAAAAT ATACTGCAAT TCAGAAGGTT GGACCTCAGC TTCATGATTG CTTTCCTCTC
  R
  TTTGATCAAG TGGGTGTCTG GCCATGTCCT CTGGGATTTC CCAGGTGAAC TAAGCACACA
  GGACTTAACT AAAAAAAAAA ATCACAATCT TCAGGGGGAA TGTGACTCAA ATTTCACATA
  GAAAAATCTA CATAGGAGTT GGTTAATACA CACGTGCAAT CCCTAGCACT TGAGAGGGTG
  AGGTTAGGGC AGAGGTATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360811	MGP_WTSI_12_27128536	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249665664					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360811	MGP_WTSI_12_27128536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26493670 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	451 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	within coordinates
Tssr112998	transcription start site region 112998	70 bp upstream
Tssr112999	transcription start site region 112999	117 bp upstream
Tssr113000	transcription start site region 113000	241 bp upstream
Tssr113001	transcription start site region 113001	715 bp upstream
Tssr113002	transcription start site region 113002	739 bp upstream
Tssr113003	transcription start site region 113003	814 bp upstream
Tssr113004	transcription start site region 113004	874 bp upstream
Tssr113005	transcription start site region 113005	900 bp upstream
Tssr113006	transcription start site region 113006	1263 bp upstream
Tssr113007	transcription start site region 113007	1347 bp upstream
Tssr113008	transcription start site region 113008	1515 bp upstream
Tssr113009	transcription start site region 113009	1533 bp upstream
Tssr113010	transcription start site region 113010	1683 bp upstream
Tssr115902	transcription start site region 115902	801 bp upstream
Tssr115903	transcription start site region 115903	471 bp upstream
Tssr115904	transcription start site region 115904	447 bp upstream
Tssr115905	transcription start site region 115905	149 bp upstream
Tssr115906	transcription start site region 115906	29 bp upstream
Tssr115907	transcription start site region 115907	23 bp downstream
Tssr115908	transcription start site region 115908	63 bp downstream
Tssr115909	transcription start site region 115909	149 bp downstream
Tssr115910	transcription start site region 115910	201 bp downstream
Tssr115911	transcription start site region 115911	251 bp downstream
Tssr115912	transcription start site region 115912	265 bp downstream
Tssr115913	transcription start site region 115913	300 bp downstream
Tssr115914	transcription start site region 115914	352 bp downstream
Tssr115915	transcription start site region 115915	381 bp downstream
Tssr115916	transcription start site region 115916	438 bp downstream
Tssr115917	transcription start site region 115917	484 bp downstream
Tssr115918	transcription start site region 115918	503 bp downstream
Tssr115919	transcription start site region 115919	530 bp downstream
Tssr115920	transcription start site region 115920	557 bp downstream
Tssr115921	transcription start site region 115921	862 bp downstream
Tssr115922	transcription start site region 115922	958 bp downstream
Tssr115923	transcription start site region 115923	1041 bp downstream
Tssr115924	transcription start site region 115924	1112 bp downstream
Tssr115925	transcription start site region 115925	1127 bp downstream
Tssr115926	transcription start site region 115926	1476 bp downstream
Tssr115927	transcription start site region 115927	1520 bp downstream