rs249670235 SNP Detail

Summary

• ID
  rs249670235
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127222679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATATCCTT GTCCATCTTC
  CCGCCTCGGT CCTTCATAGG CCTTTGAGAT ATTCTCTGCA CTCTGTAGCT CATGAAATCA
  TGGTTACATC CCTCCCTTCT TAAAACTTGT TACTAGGGGC TGGAAAGATG GCTTGGTGGT
  TAAGAGCGCT GACTGCTCTT CCGAAGGTCC TGAGTTCGAA TACTAGCAAC CACGTGGTGG
  Y
  TCACAACCAT CCGTAAGGAG ATCTGGAGCC CTCTTCTGGA GTGTCTGAAG ACAGCTACAG
  TGTACTTACA TATAATAAAT AAATCTAAAA AAAAAAAAAA ACCCAAAAAA CTTGTTACTA
  GTTCTTACCT CCAAACCCAA GTCTATAGTC CCGGCATTCC CCAGCCCCCT GACACACACA
  TACTCTTACC TTGCCTCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363174024	MGP_WTSI_4_127006130	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249670235					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363174024	MGP_WTSI_4_127006130	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127222679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14848	CpG island 14848	1310 bp proximal
Gjb3	gap junction protein, beta 3	within coordinates
Gm40251	predicted gene, 40251	477 bp upstream
Rr599858	regulatory region 599858	1124 bp distal
Rr599859	regulatory region 599859	137 bp proximal
Rr599860	regulatory region 599860	265 bp proximal
Rr599861	regulatory region 599861	831 bp proximal
Rr599862	regulatory region 599862	1332 bp proximal
Rr599863	regulatory region 599863	1948 bp proximal
Tssr43418	transcription start site region 43418	212 bp downstream
Tssr43419	transcription start site region 43419	1661 bp downstream
Tssr43420	transcription start site region 43420	1889 bp downstream
Tssr43421	transcription start site region 43421	1913 bp downstream