rs249676628 SNP Detail

Summary

• ID
  rs249676628
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101277570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCCGAGG CTGCTCGGCA
  GCGCCTCGGA CTGCACTGGC CGCACGCGCG TGGGAAGGGA CCCTGCACGG CAGGCCGAGG
  GAAACGCGAG CCTCTCGGCG GGGACCCTAA CTGGCCTCTC GTGCCGCCTG CCGAAAGCCG
  AGCCCCTGGG TTCCCAGTTG TGGTCCTTCT CAACCGCGGG TCGCCTTCCC CCGCGAGGAG
  M
  CGAGCACCGC GCCGCCCACC TGTGGGAGTC GCGGCCGCTG GCGCTCTGGG ACTCTGCGGC
  TCGCTCCCCC ACGGCCTCTC GCGCGCGCTC CAGCCTGGAG CTAAGTGCTG CGTGGCGGTG
  AAAGGCCTGT GGTCGGTGCA GGCGGCCGCG ACGAACTGTC CCTGCTAACC CCCCCCCCCC
  CTCCTCAAGC CCAGCTTGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321229933	CHEV_4_101092978	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249676628					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101277570 () rs orientation: forward

Symbol	Name	Function Class
Ak4	adenylate kinase 4	within coordinates
Cpgi14500	CpG island 14500	within coordinates
Gm69573	predicted gene, 69573	within coordinates
Rr596145	regulatory region 596145	1044 bp distal
Rr596146	regulatory region 596146	1036 bp distal
Rr596147	regulatory region 596147	114 bp proximal
Tssr37989	transcription start site region 37989	1041 bp downstream
Tssr37990	transcription start site region 37990	1024 bp downstream
Tssr37991	transcription start site region 37991	995 bp downstream
Tssr37992	transcription start site region 37992	641 bp downstream
Tssr37993	transcription start site region 37993	177 bp downstream