rs249684439 SNP Detail

Summary

• ID
  rs249684439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129229660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGAGGAGA AAACGCATCA CCGTTTAGAC
  TTACAGGTGC CTAATTCAAG GTGGCGTCTT TTAACTGACT CCCTCGGTAC TAATAGTGAT
  GAGTGCAGGA AATAAGATGC TGGTCTCTAA AACATGTTAT AAAAGCGGCA GGACCGAGCC
  Y
  GGCAGCCCGG CAGCCCGGCA GCCGCAAGCG GGTATATCCT TCCGCGAGCT TGCAGAATGG
  AGTCCTGGTC CTTTTAGACC CGCTGCCAAG GGGGTGGGGT GTAGAGCGGA AGTTATGGCG
  CGGGGCCGAA GTCTGGCTGA TGAAGGGCGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312045	CHEV_4_129013111	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249684439					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129229660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	within coordinates
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	497 bp upstream
Rr367701	regulatory region 367701	200 bp downstream
Rr367702	regulatory region 367702	within coordinates
Rr600200	regulatory region 600200	525 bp distal
Rr600201	regulatory region 600201	within coordinates
Rr600202	regulatory region 600202	874 bp proximal
Tssr39141	transcription start site region 39141	222 bp downstream
Tssr39142	transcription start site region 39142	95 bp upstream
Tssr39143	transcription start site region 39143	149 bp upstream
Tssr43492	transcription start site region 43492	603 bp upstream
Tssr43493	transcription start site region 43493	550 bp upstream
Tssr43494	transcription start site region 43494	490 bp upstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	within coordinates