rs249685321 SNP Detail

Summary

• ID
  rs249685321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAACCATA ATTTAGTATA
  GAAGGGGCCT TCTAATGCTG GGGTGTCACA AGGAGGATGA GAATTTCTTG GGTCACCCTT
  GATCTCACCA GAGAGAGGTG CCCAGCCCTC AAGGAACTCT CCCCGGGGGA TCTTAGAGAG
  CTGTGGTGGA ACTTCCGGGG TGTCACCAGA AAGGACAGGA CCCCACATCA CAGAGGTGCC
  Y
  GGGACGATAG CATGCTGGCT CGGTACAGGG AGCCCGTGGA ATTGTTCCCC CCTTCTTCCT
  GCCCCCTTCT TTCCTTTTCC TTTATCCCCA AAACTTTTTG CTTTTTCTTC TTCCTTTTCC
  CTCTCTCCCT CTGTCCATCT GAGAACCTGA GGCCCTAGAG GGATGGTAAC TAATTGTCCC
  CCACATCTCA GAGAATGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384336300	MGP_WTSI_11_94815140	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249685321					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384336300	MGP_WTSI_11_94815140	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844652 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	784 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	357 bp distal
Gm74287	predicted gene, 74287	425 bp downstream
Gm74290	predicted gene, 74290	1585 bp upstream
Tssr3647	transcription start site region 3647	1842 bp downstream
Tssr104292	transcription start site region 104292	1994 bp downstream
Tssr104293	transcription start site region 104293	1887 bp downstream
Tssr104294	transcription start site region 104294	1853 bp downstream
Tssr104295	transcription start site region 104295	1809 bp downstream
Tssr104296	transcription start site region 104296	1785 bp downstream
Tssr104297	transcription start site region 104297	1762 bp downstream
Tssr104298	transcription start site region 104298	1728 bp downstream
Tssr104299	transcription start site region 104299	1694 bp downstream
Tssr104300	transcription start site region 104300	1674 bp downstream
Tssr104301	transcription start site region 104301	1554 bp downstream
Tssr104302	transcription start site region 104302	1540 bp downstream
Tssr104303	transcription start site region 104303	1521 bp downstream
Tssr104304	transcription start site region 104304	1479 bp downstream
Tssr104305	transcription start site region 104305	1457 bp downstream
Tssr104306	transcription start site region 104306	1442 bp downstream
Tssr104307	transcription start site region 104307	1425 bp downstream
Tssr104308	transcription start site region 104308	1352 bp downstream
Tssr104309	transcription start site region 104309	1328 bp downstream
Tssr104310	transcription start site region 104310	1242 bp downstream
Tssr104311	transcription start site region 104311	1193 bp downstream
Tssr104312	transcription start site region 104312	1124 bp downstream
Tssr104313	transcription start site region 104313	1108 bp downstream
Tssr104314	transcription start site region 104314	703 bp downstream
Tssr104315	transcription start site region 104315	1583 bp upstream