rs249692317 SNP Detail

Summary

• ID
  rs249692317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87051917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTAAAAC GAAGGTTTCT
  TTAAGTGGGT TTGGAAGTCC AATGCCCTGG CTCTTATATG TGCTTGAATC TCCTAAGGAT
  CCTCTTCACT ACATCACATG GTGAATAGCA TCATGAGGAG ACAGAGAGAA CGCTCCTAAG
  GGAGCCAAAA ATGAAGGAGA GGCCCGTCTT GATCAGTCAT CATAACCCCC TCTAGTAGGG
  R
  CTAAGTAGGA TCTCATGAAA AACACCATAA CCCCTTCTAA GAAAACAGCC TCAAAGGACC
  TAGTCACCTC TCCCTTCCAT CACCTCCCAA CATCATCATC ACACTAGGGA CCAAGCCTGC
  AACTTGTGCA CTTCAGGGAC AGGCTCCATC CATATTCAAG CCACAGCACA TGGTTGCTCT
  TGTTGGAGGC TGCTGTGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350380256	MGP_WTSI_1_89020770	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249692317					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350380256	MGP_WTSI_1_89020770	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87051917 () rs orientation: forward

Symbol	Name	Function Class
Akp3	alkaline phosphatase 3, intestine, not Mn requiring	778 bp upstream
Tssr7781	transcription start site region 7781	751 bp upstream
Tssr7782	transcription start site region 7782	1201 bp upstream
Tssr7783	transcription start site region 7783	1493 bp upstream
Tssr7784	transcription start site region 7784	1736 bp upstream
Tssr7785	transcription start site region 7785	1772 bp upstream
Tssr7786	transcription start site region 7786	1802 bp upstream
Tssr12838	transcription start site region 12838	1523 bp downstream
Tssr12839	transcription start site region 12839	1538 bp downstream
Tssr12840	transcription start site region 12840	1551 bp downstream